

Pydoit is really great, but I couldn't find how to extend it to build my own executor, and I always found myself confused writing new tasks and dealing with dependencies. I didn't like that snakemake relied on file names to trigger rules, I was constently juggling complicated file names. There were use cases that I could not implement cleanly in the dataflow model of nextflow. I have tried to use the following three alternatives which are all truly excelent! The task has now it's output attached to it, it can be used in the creation of other tasks. Weve got the study and writing resources you need for your assignments. Start your trial now First week only 4.99 arrowforward.

#Scriptflow install#
Then create a local env, activate, install and run! Import scriptflow as sf # set main options sf. use shlex to parse command from strings.provide simple toml/json interface for simple tasks and flows Products and services include: Cerner Etreby Pharmacy Management System, Long-term Care, RetailScriptPOS, e-Commerce, e-Prescribing, Central Host, ScriptFlow.controller could parse the log file for results (looking for specific triggers).a functional api for task creation with hooks.cache flows in addition to caching tasks (avoid same task getting scheduled from 2 places).allow to send messages with html content like images.? scripts can create tasks, not sure how to await them.remove existing output of task if task is started (issue with failing tasks that look like they worked).skip computation based on timestamp of inputs and outpus.

simpler interface with default head executor and awaitable tasks.output diagnostic / reporting (tracing how files were created).notifications (using light webserver at ).
#Scriptflow code#
describe scripts with input/output as code.describe dependencies as python code (using await/async).I will likely be changing the interface as I go. Think of it as a Make when you can write the dependencies as python code, and that can run locally, on an HPC or in the cloud (cloud is not implemented just yet). Small library that allows scheduling scripts asyncrhonously on different platforms.
